PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G144500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 571aa    MW: 63387.5 Da    PI: 6.6437
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G144500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.9e-12268324155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Manes.04G144500.1.p 268 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 324
                          78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15367418155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.04G144500.1.p 367 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418
                          78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-9268324IPR001471AP2/ERF domain
CDDcd000187.17E-19268334No hitNo description
SuperFamilySSF541719.15E-15268334IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-12269333IPR001471AP2/ERF domain
PROSITE profilePS5103217.332269332IPR001471AP2/ERF domain
SMARTSM003804.8E-23269338IPR001471AP2/ERF domain
PRINTSPR003671.3E-6270281IPR001471AP2/ERF domain
PfamPF008475.8E-10367418IPR001471AP2/ERF domain
CDDcd000186.29E-25367428No hitNo description
SuperFamilySSF541719.15E-18367428IPR016177DNA-binding domain
PROSITE profilePS5103219.006368426IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18368426IPR001471AP2/ERF domain
SMARTSM003803.6E-34368432IPR001471AP2/ERF domain
PRINTSPR003671.3E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEGFG RDEAGGFSSH HHDISVMPLR SDGSLCVVDP FKRSSNASQD  60
WRYENSMDTT SASEEGPKLE DFLGCYSNSP SDETKVYCQE DQNESHTNRI NVNVAPSFNA  120
NGDMDPRDDL ANPPHLIQSY HHYNDNPQTL VPSDNIQHCD PNPSDSHNHN PRHSHNSMYC  180
LPFESGSSVP GFKSWLSQAP FCSCTPSNEP SNCNFQPLSL AMSPSSHNGL VSASPLQVVD  240
NRKRPVRKSV AREPVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG  300
RQGGYDKEEK AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKHMTRQE FVANLRRKSS  360
GFSRGASVYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS  420
AVTNFDISRY DVKRICSSST LIAGDLAKRS AKDLAHVAVE DENSCASSTS QPLLAMTSGE  480
ASDELADIMW SASADEHQQQ AGANNSNTDS RNSCNPESPK CSVALSGELS RDNTEGLQGS  540
KYEDGNRGSN NRIGDVGLVH QVPMFALWNE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G144500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610100.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2C9W2F80.0A0A2C9W2F8_MANES; Uncharacterized protein
STRINGcassava4.1_024934m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-132AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]