PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G140300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 546aa    MW: 58758.4 Da    PI: 8.5045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G140300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0589111123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Manes.04G140300.1.p  89 FVCEICNKGFQRDQNLQLHRRGH 111
                          89*******************88 PP
2zf-C2H212.60.00041165187123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Manes.04G140300.1.p 165 WKCDKCSKRYAVQSDWKAHSKTC 187
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-588111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-788111No hitNo description
PROSITE profilePS5015710.94989111IPR007087Zinc finger, C2H2
SMARTSM003550.01789111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355250130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.26E-7160185No hitNo description
SMARTSM00355140165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MMEGLMFHQQ QQQPLQEENM SNLTSGSGEA SVSSGNRNET GTNYSQQYFV PPPPESQPVK  60
KKRNLPGNPD PDAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
TSKEIRKKVY VCPETSCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEES AKAIAAPPPN PVVLHSSSQP  240
AASGSSTPHN INLQIPQFNA TTAQDLHAFS LKKEQQSFST LRPELPPWLA CPPAGLVAGP  300
GSGPLHHHQQ TPVDHLSSSS SSILTNHQEL SPNPNPSLGP TLPHYLQAAP SPHMSATALL  360
QKAAQMGATM SSKTTGLMRP HHQPQHHHQE QAHVSSNSSN NNANTNGFGL NLSSREEQLP  420
GSGSFVHGLQ APFGNKAVPS GTSGSQPSSA LLQEMMNSLS SASGFDGASS FEEAFVGGIL  480
NTKKDDDNAG GGGGGSGGGG GEGLTRDFLG LRAFSHSDIL SMAGLGNCVN TSQEQHNQSQ  540
KTWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34161222364Zinc finger protein JACKDAW
5b3h_F7e-34161222364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115127KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G140300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-143AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610513.10.0protein indeterminate-domain 7-like
SwissprotQ9LRW71e-141IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2C9W2E10.0A0A2C9W2E1_MANES; Uncharacterized protein
STRINGcassava4.1_004983m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-120indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]