PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G140100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 28737.4 Da PI: 5.141 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.3e-40 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k l++ ++++am+++++++++ra+dPv G++++i++lq+q+e + Manes.04G140100.1.p 13 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKPLSQPDKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRQIEYH 102 7***************************************************************************************** PP DUF260 91 kaelallkee 100 kael+l+ ++ Manes.04G140100.1.p 103 KAELDLVLHQ 112 ****998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.708 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-37 | 13 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSIPRIGNGT TQACAACKYQ RRKCAPDCIL APYFPHDRQR QFLNAHKLFG VSNITKIIKP 60 LSQPDKDEAM RTIIFQSDVR ANDPVGGCYR IIRELQRQIE YHKAELDLVL HQLAICRAQA 120 HQQTHFQMLE TDDSTTLGCE IVNQDSLDIY DPTMIQYHYP QTQEEEQEFV VQDHNQQLHE 180 NVVNETAALT LQDSTPVVSS SSSPTLHNFK QPFVNECDDI KPLLDINDVK FEPEELVERK 240 FVPSTQLVIS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 9 | 107 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 9 | 107 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G140100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609933.1 | 0.0 | LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 3e-72 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2C9W2F4 | 0.0 | A0A2C9W2F4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028597m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-71 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G140100.1.p |
Publications ? help Back to Top | |||
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