PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G130100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84750.6 Da    PI: 5.8639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G130100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21109164156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Manes.04G130100.1.p 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 164
                          7999************************************************9877 PP
2START226.67.6e-712775012206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          + ++a++el+k+a+++ep+W ks+    e++n+de++++f  ++        +s+ea+r++gvv+ +l++lv+++ d++ qW+e+++   
  Manes.04G130100.1.p 277 IVNQAMEELIKMATSGEPLWIKSVetgrEILNYDEYMKEFGVENPsnsgrlmRSIEASRETGVVFVDLPRLVQSFSDVN-QWKEMFPcli 365
                          56789***********************************66555999*******************************.********** PP

                          .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           ka+t++vis+g      g +qlm+ae q+l+p+vp R+ +fvRy++q +a++w+ivdvSvd  +++  ++s+v+++++pSg+li+++sn
  Manes.04G130100.1.p 366 aKAATVDVISNGegpirnGGVQLMFAEVQMLTPMVPtREIYFVRYSKQISAEKWAIVDVSVDKVEDNI-DASLVKCRKRPSGCLIQDTSN 454
                          ******************************************************************98.9******************** PP

                          CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          gh+kvtwvehv+++++++h ++r +v+sgla+ga++wvatlq qce+
  Manes.04G130100.1.p 455 GHCKVTWVEHVECQKNTVHTMYRTIVNSGLAFGARHWVATLQLQCER 501
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.98E-2195167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-2396160IPR009057Homeodomain-like
PROSITE profilePS5007118.269106166IPR001356Homeobox domain
SMARTSM003891.5E-18108170IPR001356Homeobox domain
PfamPF000461.3E-18109164IPR001356Homeobox domain
CDDcd000862.78E-17113164No hitNo description
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084840.751267504IPR002913START domain
SuperFamilySSF559617.8E-35269501No hitNo description
CDDcd088759.54E-113271500No hitNo description
Gene3DG3DSA:3.30.530.201.7E-5273496IPR023393START-like domain
SMARTSM002343.6E-71276501IPR002913START domain
PfamPF018528.0E-57277501IPR002913START domain
SuperFamilySSF559613.41E-15531746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MGGVDMSNNP PTSHTKDFFA SPALSLSLAG IFRSANAGGA AEAQSVEVEE GEEGSGGGRR  60
EGNVEISSEN SGPVRSRSDD EFEGGEHDDD DGDDDDDNGG DDKNKKKKRK KYHRHTTEQI  120
REMEALFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKTEME  180
KLREENKAMR ETINKACCPN CGLSTTSRDT SLTTQEQQLR IENAKLKAEV EKLRAAIGKY  240
PPGAAPSCSA GNEQENRSSL DFYSGIFGLE KSRIMEIVNQ AMEELIKMAT SGEPLWIKSV  300
ETGREILNYD EYMKEFGVEN PSNSGRLMRS IEASRETGVV FVDLPRLVQS FSDVNQWKEM  360
FPCLIAKAAT VDVISNGEGP IRNGGVQLMF AEVQMLTPMV PTREIYFVRY SKQISAEKWA  420
IVDVSVDKVE DNIDASLVKC RKRPSGCLIQ DTSNGHCKVT WVEHVECQKN TVHTMYRTIV  480
NSGLAFGARH WVATLQLQCE RIVFFMATNV PTKDSTGVAT LAGRKSILKL AQRMTWSFCR  540
AIGASSFHTW NKVTSKTGDD IRVSSRKNLN DPSEPTGVIL CAVSSVWLPV SPHVLFDFLR  600
DDAHRNEWDI MSNGDPVQSI ANLAKGKDRG NAVTIQTMKP KENPLWVLQD CCTNAYESMV  660
VYAPVDINGM QSVITGCDSS NIAVLPSGFS ILPDGLESRP LVITSRQEEK GTEGGSLLTI  720
AFQILTNTSP TAKLSMESVD SVNTLISCTL RNISQACNVK IVDYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKKKRK
2104110KKKKRKK
3106110KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G130100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090001e-117AC209000.1 Populus trichocarpa clone POP023-H09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611342.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2C9W2330.0A0A2C9W233_MANES; Uncharacterized protein
STRINGcassava4.1_023666m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]