PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G123900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 399aa MW: 45538.3 Da PI: 4.3164

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G123900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.7e-16	164	248	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k ++ + ++ss+++yf++++ Manes.04G123900.1.p 164 WTEHETFVLLDAWGDKFLQCGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKINQVDM-GGNSSKWVYFKKMD 248 ***********************************762678*****************9999986.88899******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-22	163	250	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-4	164	231	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.272	164	221	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDDTEDDARY PPNPYGVNHQ QGYGSSSQQK LSVKNAPYSR TIGNQYVDDD EEYDNEEEDE 60 EELGDDDGEN NQNNGIQYVG KEVDDDDYDE DDEDTNADEE DDDADNQNNY SGRINDDLER 120 HPKKRKLKSI ASSYEFAPRV PAPPVTASSA PKPSFAGRNP LTDWTEHETF VLLDAWGDKF 180 LQCGRKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKEKIN QVDMGGNSSK 240 WVYFKKMDML MSTSAQQGGL SCGVDSGEYV FMNPKVYLNR ANGLDEMRDS PGNSDSADEA 300 EDDSDGLPPK KRKSGRDRNE RSSFRVLADS FQKFSEIYEK IENNKRQQML ELEKMRMDFH 360 RDLEMQKRQI IERAHAEIAK IRLGDDDNND ISADNASG*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDDTEDDARY PPNPYGVNHQ QGYGSSSQQK LSVKNAPYSR TIGNQYVDDD EEYDNEEEDE  60
EELGDDDGEN NQNNGIQYVG KEVDDDDYDE DDEDTNADEE DDDADNQNNY SGRINDDLER  120
HPKKRKLKSI ASSYEFAPRV PAPPVTASSA PKPSFAGRNP LTDWTEHETF VLLDAWGDKF  180
LQCGRKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKEKIN QVDMGGNSSK  240
WVYFKKMDML MSTSAQQGGL SCGVDSGEYV FMNPKVYLNR ANGLDEMRDS PGNSDSADEA  300
EDDSDGLPPK KRKSGRDRNE RSSFRVLADS FQKFSEIYEK IENNKRQQML ELEKMRMDFH  360
RDLEMQKRQI IERAHAEIAK IRLGDDDNND ISADNASG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G123900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610381.1	0.0	trihelix transcription factor ASIL2-like
Refseq	XP_021610383.1	0.0	trihelix transcription factor ASIL2-like
Refseq	XP_021610384.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A2C9W207	0.0	A0A2C9W207_MANES; Uncharacterized protein
STRING	cassava4.1_009108m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.04G123900.1.p