PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G117200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 567aa    MW: 62540.9 Da    PI: 5.1957
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G117200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR491.2e-15433471341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCk+skClk+YCeCfaag++C ++C C++C+N+ e
  Manes.04G117200.2.p 433 CKRCNCKRSKCLKLYCECFAAGVYCLDSCACTNCFNRPE 471
                          89**********************************876 PP
2TCR346e-11519541123
                  TCR   1 kekkgCnCkkskClkkYCeCfaa 23 
                          ++k+gCnCkkskClkkYCeC++a
  Manes.04G117200.2.p 519 RHKRGCNCKKSKCLKKYCECYQA 541
                          589******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.4E-16431472IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.703432566IPR005172CRC domain
PfamPF036389.4E-12434469IPR005172CRC domain
SMARTSM011143.7E-4519556IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.9E-7521541IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDSPEDNRIP PSTTSSSSPT VQESPFFNYL RNLSPIRSGK TARYVQGFTQ TNFTVPPPPV  60
FTSPRVDLQR ETSFREETDA AGPDIYGQGD THLKPEPIHC FQKEDQPCSP SGCIDEYLAD  120
PVDMEDTTKS SDLCAQTRND VPMIFENRLS THGDTIDKDD DHVDSHMFQG SFAGAQDHEK  180
FEPQATDGQD NKVGDSYQSI PQTLQSVKTH KDFGEDSRLA LKQSAKDADQ HQRGIRRHLQ  240
FGATMSCKDT GNETHDTANS TLAEGLTDFE SLVSYQIEPS GISNSWQAGT HAQTVNFLLS  300
SCPPQPVMSV ESCGNHNVSA CFPSDLELSA SGIIRLTDSM GSDSTATQKF VGKVHAREEK  360
QIAVRNHSSA SVAGEIYAQV EDDQQETQAA KAIVPYDGRT LTPQNTNMVE ELYQASPKRN  420
RKRAKCINEG EGCKRCNCKR SKCLKLYCEC FAAGVYCLDS CACTNCFNRP EYEDTVLDTR  480
QQIETRNPLA FAPKVVKQDT DSPANIVEEG NWTTPSSARH KRGCNCKKSK CLKKYCECYQ  540
AWPGSGSDHE SNRSNSGLDQ STNLCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1243454112105Protein lin-54 homolog
5fd3_B4e-1243454112105Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G117200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609346.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A2C9W1R00.0A0A2C9W1R0_MANES; Uncharacterized protein
STRINGcassava4.1_026451m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-52TESMIN/TSO1-like CXC 2