PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G100700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 331aa    MW: 37395.3 Da    PI: 8.5242
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-1643102155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Manes.04G100700.1.p  43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 102
                          57*******************999955656446*************************98 PP
2AP2521.8e-16145196155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Manes.04G100700.1.p 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 196
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-1243102IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1743112IPR016177DNA-binding domain
CDDcd000185.02E-1143112No hitNo description
SMARTSM003803.6E-2744116IPR001471AP2/ERF domain
PROSITE profilePS5103220.3144110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1644111IPR001471AP2/ERF domain
PRINTSPR003674.6E-64556IPR001471AP2/ERF domain
PfamPF008472.0E-12145196IPR001471AP2/ERF domain
CDDcd000181.87E-24145206No hitNo description
SuperFamilySSF541717.85E-18145206IPR016177DNA-binding domain
SMARTSM003807.7E-25146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.386146204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17146205IPR001471AP2/ERF domain
PRINTSPR003674.6E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAKISQQTQR NNSTANTATN RPTTKTKRTR RTLPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY WGQDTILNFP LSTYQEKLKE  120
MESQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDLA AIEYRGLNAV TNFDLSRYIK PPRPNTSSDS NCTTNSNQES GLSFTETTMP  240
SPRPSGGSTS SALGLLLQSS KFKEMLERTS PNDCPSVLSE SELPRRSFPD DIQTYFDCQD  300
SSSYVEGDDI IFGDLNTFAS PSFHCELIDC *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G100700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741611e-153AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609923.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-128AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9W1780.0A0A2C9W178_MANES; Uncharacterized protein
STRINGcassava4.1_021785m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-108ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]