PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G094600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 266aa    MW: 29036.5 Da    PI: 4.5693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G094600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-193078355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Manes.04G094600.1.p 30 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 78
                         67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-302885No hitNo description
SMARTSM003804.5E-342992IPR001471AP2/ERF domain
PROSITE profilePS5103220.5082986IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-203087IPR016177DNA-binding domain
PRINTSPR003673.2E-83041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-283086IPR001471AP2/ERF domain
PfamPF008475.3E-123278IPR001471AP2/ERF domain
PRINTSPR003673.2E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNPSPSKTKK KQTHQQPQAP TQAAAGGARF LGVRRRPWGR YAAEIRDPST KERHWLGTFD  60
TAEEAALAYD RAARSMRGSR TRTNFVYSDM PAGSSVTSII SPDEQQQIQS LQQQQQANNF  120
SSSIFVSPSQ PDAASIINNQ QDFSLSQCHF SDEFSSLDGG DIWGCSSITT YNYHEQIPVI  180
TNDELPPFPS DISGSFSSSF DSGIQSGWSD TNSSGFVGLE DQTTGGSYLG FDTSEYVHSP  240
LFSRMPPVSE TVPDGFDLGS SSYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202585162ATERF1
3gcc_A2e-202585162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G094600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609866.10.0ethylene-responsive transcription factor LEP
TrEMBLA0A2C9W3910.0A0A2C9W391_MANES; Uncharacterized protein
STRINGcassava4.1_025891m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-34ERF family protein