PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G088500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 313aa MW: 33848.6 Da PI: 7.8376

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G088500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.5e-39	67	158	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+k+++++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ s+s++ s + Manes.04G088500.1.p 67 APKRSSNKDRHTKVEGRGRRVRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaA-TGGSVSQQGTSVSag 155 789******************************************************************88853.333333332222223 PP TCP 89 ..k 89 + Manes.04G088500.1.p 156 lhQ 158 331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.4E-32	72	269	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.062	73	127	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDPKGSNSKN PHELPSFLTQ PPQTLQQHQN QSQQQPQKAS MGENKPAEIK DFQIVIADKE 60 DQKKQLAPKR SSNKDRHTKV EGRGRRVRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA 120 EPSIIAATGT GTIPASALAA TGGSVSQQGT SVSAGLHQKI DESGGSSSRT IWPMLCGNLS 180 RPHHVATTGL WPPLGGFGFQ TSSTTGPPTT NLGNESSSYL QKIEFPGFEL PGNNMGPVNF 240 TSILAGSNQQ LPGLELGLSQ DGHIGVLNPQ TLSQIYQQMG QARVHQQQQQ HQHQQLHQQQ 300 NLAEDDSQGS EQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G088500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609531.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	5e-85	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2C9W110	0.0	A0A2C9W110_MANES; Uncharacterized protein
STRING	cassava4.1_012485m	1e-174	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	9e-77	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.04G088500.1.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]