PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G084400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 336aa    MW: 37464 Da    PI: 4.6704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G084400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17257290134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C + kTp+WR gp g ktLCnaCG++y++ +
  Manes.04G084400.1.p 257 CSHCLVQKTPQWRTGPLGAKTLCNACGVRYKSGR 290
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.2E-7820329IPR016679Transcription factor, GATA, plant
SMARTSM004014.5E-13251305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.134251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-13254314No hitNo description
Gene3DG3DSA:3.30.50.109.5E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.60E-12256304No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15257290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEYCVAERAL KSSLRNELVY KSTQQALFED FLCSNANNGV VSCDDFSVDC FFDFSNGECY  60
IQEKNMLEVE EEEEEEEEEK DSLSDSYQDR VDDDNNSNFS TTFSNSLLSG ELSVPVDDLA  120
ELEWVSQIMD DSSSEFSLLC PLKPENLSNR FQPQPEPANF IKTSCLFPAP IPSKPRSKRS  180
RARTWCIGSP ISDLSPSSPS SSSSPASSSA STPCIVLTNM VQSIDSILTE PPMKKLKKKP  240
ELQTGEAFGS TQFQRRCSHC LVQKTPQWRT GPLGAKTLCN ACGVRYKSGR LFPEYRPACS  300
PTFSADVHSN SHRKVLEIRK KKEIVVPEYG MVPNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G084400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611192.10.0GATA transcription factor 5-like
TrEMBLA0A251L2120.0A0A251L212_MANES; GATA transcription factor
STRINGcassava4.1_011430m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5