PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G043000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 268aa MW: 30719.8 Da PI: 5.785 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.8 | 5.9e-26 | 99 | 189 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYAk++GF++r+++ ++s +n ++ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ g+w+vtk++ eHnH+l Manes.04G043000.1.p 99 DFYYEYAKRTGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHALrKDRILPPRPITREGCKAMIRLAARDGGVWVVTKFVREHNHKL 188 6*****************************************9988723344459**********************************9 PP FAR1 90 a 90 + Manes.04G043000.1.p 189 M 189 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-23 | 99 | 189 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVRSAIVSIL LGLLDRVPFI GDVMTSIPDR HEFLDSDGGL DDETLETCEH EDTEDGLLLN 60 CNLQHGAKTS PESSIEYISA NNVEPYNGMT FSSLDDARDF YYEYAKRTGF TIRTNRIRHS 120 LKNMAVIGRD FVCSREGFRA AKHALRKDRI LPPRPITREG CKAMIRLAAR DGGVWVVTKF 180 VREHNHKLMN HCNFPGELPT INILSEEEKD KKIQDLYDEL QRERERSATI QHQLHRILKD 240 IEEHAEFMSI RVEDIINNLK EIELGNL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G043000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609684.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_021609685.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_021609686.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251L0Z7 | 0.0 | A0A251L0Z7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014884m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-41 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G043000.1.p |