PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G039500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bZIP
Protein Properties Length: 413aa    MW: 45120.2 Da    PI: 6.5713
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G039500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-10219277563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l++e+
  Manes.04G039500.1.p 219 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 277
                          9*********************************************9998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-16215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932217280IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11219270No hitNo description
PfamPF001709.6E-9219273IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-10219273No hitNo description
CDDcd147039.15E-26220269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDKDKAPSHS GGLPPPSGRF SSFSPPGSSF NVKPEPLSAA FPPMAPATSS DPSNFGHGSD  60
SSRFSHDISR MPDNPPKKLG HRRAHSEILT LPDDISFDSD LGVVGGADGP SFSDETEEDL  120
FSMYLDMDKF NSTSATSAFQ LGESSTPPPL APAPAIPADV SPGASERPRV RHQHSHSMDG  180
STSIKPEMLI SGAEDVSAAD TKKAMSAAKL AELALIDPKR AKRIWANRQS AARSKERKMR  240
YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLTAENSEL KLRLQTMEQQ VHLQDALNDA  300
LKEEIQHLKV LTGQAMPNGG PMMNFASFGA GQQFYPNNHA MHTLLTTQQF QQLQIHSQKQ  360
QQQFQQHQLH QLQQQQQEQQ QQRVGDLKMR GTMSSPNQKD NASDINPPAT ND*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G039500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610521.10.0probable transcription factor PosF21
SwissprotQ040881e-158POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2C9VZH70.0A0A2C9VZH7_MANES; Uncharacterized protein
STRINGcassava4.1_008671m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-164bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]