PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G025300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20672.4 Da PI: 5.6445 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.7 | 4.1e-43 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l Manes.04G025300.1.p 32 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNEL 121 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la++++e Manes.04G025300.1.p 122 QAQLAKAQAE 131 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.313 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-43 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDHSEAANSN SSSPSSSSSP PTTPPPTVVM SPCAACKILR RRCAEKCVLA PYFPPTEPAK 60 FTIAHRVFGA SNIIKFLQEL PESQRADAVS SMVYEASARI RDPVYGCAGA ICHLQKQVNE 120 LQAQLAKAQA ELVNMQCQQA NLVALLCMSP QQLSGQSVDD FISTPQSYQS NPCFFDDTNC 180 LGSQWEPLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 21 | 139 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 21 | 139 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G025300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609899.1 | 1e-139 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-77 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2C9W1E6 | 1e-138 | A0A2C9W1E6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022967m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-69 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G025300.1.p |