PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G023700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 523aa    MW: 57499.4 Da    PI: 8.8847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G023700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056385123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Manes.04G023700.1.p 63 FICEICNKGFQRDQNLQLHRRGH 85
                         89*******************88 PP
2zf-C2H211.80.00074139161123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Manes.04G023700.1.p 139 WKCEKCSKKYAVQSDWKAHSKIC 161
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.33E-76285No hitNo description
PfamPF121716.3E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM0035585104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.33E-7134159No hitNo description
SMARTSM00355140139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MMSEDGYSVP SSIRGFVHQE PTPNPNPNPD LTMKKKRNLP GTPDPDAEVI ALSPKSLMAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSSKEIR KKVYICPEKS CVHHDPSRAL  120
GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARFTSV SAAINANFRN DLINGAPTNS INPHQSTGIS QFSSVFRPEF  240
ANGSELVADL STVDGQKSRL PIWLDHANPQ MNLINSNVFL ATNSACLPEL AQTPQMDMFG  300
PATSQAQWFN KYQEAPFTGG SNLSVPALPL GLKEEEGNEG DLSESAASLY SSNQHQQQRN  360
SAHMSATALL QKAAQMGSTR SNGIPLMSPP SLPNVSNLNS YNQSKSIETF KFLSRQPNQA  420
AENFNELANS LSPASTPATL LGDSNSSSIL GSDNATKNLN HLMMQSNRKQ NHGSSSEIEG  480
SLTRDFLGVG GETRRPLLQQ EIAKFASISS GMDLSQYCSG NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-37135201369Zinc finger protein JACKDAW
5b3h_F3e-37135201369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189101KLKQRSSKEIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G023700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611087.10.0protein indeterminate-domain 9-like
TrEMBLA0A2C9VYZ50.0A0A2C9VYZ5_MANES; Uncharacterized protein
STRINGcassava4.1_007089m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-104C2H2-like zinc finger protein