PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.04G022800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 228aa MW: 25900.3 Da PI: 9.8877 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.3 | 3.3e-13 | 121 | 209 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e+ +d ++P+arik+i+k+++ ++s ++ l+ ka e fi ++ ++ + +++ l +++av++ fdfl d vp++ Manes.04G022800.1.p 121 EDGEDGTMCRFPMARIKRIMKSEDPGLQLSQDVVFLVNKATEKFIEQFCEEAYGCSVRDRKNYLAYKHLSTAVSEQRRFDFLSDFVPEK 209 5556666779**************99************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.09E-18 | 122 | 208 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.2E-16 | 130 | 193 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-23 | 131 | 208 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MASIEKSKNE EEQKKKKKKN KEGAVTSKSP IKKTLTKSPK QEGEKEKKKK KKQQHSKTSN 60 GTISEPPEVL IIPSSSCDSQ ESQDDDREEI AKRIEPSNRS NKSSKPVKTN KRKEKAEADN 120 EDGEDGTMCR FPMARIKRIM KSEDPGLQLS QDVVFLVNKA TEKFIEQFCE EAYGCSVRDR 180 KNYLAYKHLS TAVSEQRRFD FLSDFVPEKL KAVDALAQRN LVENREG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.04G022800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609413.1 | 1e-164 | protein FAM133B | ||||
TrEMBL | A0A2C9VZ11 | 1e-163 | A0A2C9VZ11_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015531m | 1e-164 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-36 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.04G022800.1.p |