PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G016700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 26058.5 Da PI: 9.0043 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.3 | 2.5e-25 | 44 | 153 | 4 | 102 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec..eaessss 80 + r++++h kv+gR+ R+R++a+caar+F+L++eLG+ + ++tieWLl ++ t t +++s+ +++ s+ Manes.04G016700.1.p 44 NRLRSKDRHKKVEGRGTRIRIPADCAARIFQLTRELGHRTSGETIEWLLYHVPASDFPTTTTaastcsdtiavTANSS--LhvMPSATSN 131 5789*********************************************99977766666664444444333211111..1222333333 PP TCP 81 sasnsssgkaaksaakskksqk 102 +asnsss++ +++++ sk++++ Manes.04G016700.1.p 132 AASNSSSSSPCSKQKISKSKKT 153 3333333333333332222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-21 | 48 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.361 | 48 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVSQEIPIDP SQFFTNFSAT QQLLPPNPTA ATAPKTQQLL PSLNRLRSKD RHKKVEGRGT 60 RIRIPADCAA RIFQLTRELG HRTSGETIEW LLYHVPASDF PTTTTAASTC SDTIAVTANS 120 SLHVMPSATS NAASNSSSSS PCSKQKISKS KKTNTPLHVS LNSCASVSGS SFPASNSLDA 180 VLLSTPIRRE SEIVRMPMAV VEPERKKEDL RGEFDLFPGA NGSLPNMSFT SLLMQLERED 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G016700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609481.1 | 1e-176 | transcription factor TCP11-like | ||||
Refseq | XP_021609482.1 | 1e-176 | transcription factor TCP11-like | ||||
TrEMBL | A0A2C9W033 | 1e-175 | A0A2C9W033_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022504m | 1e-176 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22597 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-22 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G016700.1.p |