PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G012800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 290aa    MW: 31591.9 Da    PI: 6.7392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G012800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046121143123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C++sF++   L  H  +H
  Manes.04G012800.1.p 121 YECKTCNRSFPSFQALGGHRASH 143
                          99**********99999998887 PP
2zf-C2H212.80.00036195217123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cg  F++   L  H+r+H
  Manes.04G012800.1.p 195 HECAICGSEFTSGQALGGHMRRH 217
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-13120145IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-8120143No hitNo description
SMARTSM003550.06121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-8190217No hitNo description
PfamPF139121.6E-10195219IPR007087Zinc finger, C2H2
SMARTSM003550.11195217IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055195222IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMELAQEEF MGSNDPSQIV KGKRSKRLRS SSAGITSSSS SGTCGGSGGG EPEHVSISSP  60
TSCSDEIYES TEEEEDMANC LILLAQGDGP RRQQVMRDEN NRKFSEVSAN PTTNKASFFV  120
YECKTCNRSF PSFQALGGHR ASHKKPKSII SPLLDELQDC QLNKSSPDHH LLHPLSLQIS  180
NKSCSFVGNN KSKIHECAIC GSEFTSGQAL GGHMRRHRAN SSANNNQVVI SATDSSSEDQ  240
IKQRNILALD LNLPAPEEDH HHHRESKFQF PSTQQALAFS APTLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G012800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609938.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9VYK30.0A0A2C9VYK3_MANES; Uncharacterized protein
STRINGcassava4.1_031586m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-50C2H2 family protein