PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G009200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 300aa MW: 32365.5 Da PI: 4.5987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G009200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	273	296	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C +sF + L++H + H Manes.04G009200.1.p 273 FACKSCERSFASDVALQSHSKAkH 296 78*****************88767 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.552	273	299	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	275	296	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEFWGIEVKA GEPVKVTPDP ETIIHLSQAA LGESKKGNES VPLFLKIDDK KIVLGTLSPE 60 NIPQLPFDLV FEREVELSHN WKSGSVYFCG YKSQLPEEEY PSPEDSEDEE PFPLMNADNG 120 NVQPVVENTK PAKAKANVSK PDSSVKQKAK PVDPKKEIKA EDESDDDESD EQDSSDEEGD 180 SDEEMSEDSE EEGDSESEDE ETPKKAEKGK KRPNESATKT PVPSKKIKSV TPQKTDGKKG 240 GHTATPHPAK GGGKAAANGS NTKAQTPKSG GQFACKSCER SFASDVALQS HSKAKHGGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G009200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610077.1	0.0	histone deacetylase HDT1
Swissprot	Q8LJS2	8e-75	HDT1_SOYBN; Histone deacetylase HDT1
TrEMBL	A0A2C9VYG4	0.0	A0A2C9VYG4_MANES; Uncharacterized protein
STRING	cassava4.1_013167m	1e-172	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	8e-37	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Manes.04G009200.1.p