PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G004100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bZIP | ||||||||
Protein Properties | Length: 493aa MW: 54471.2 Da PI: 7.2728 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.4 | 2e-10 | 188 | 229 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Manes.04G004100.1.p 188 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 229 6889*************************9877777766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-4 | 185 | 244 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.186 | 187 | 231 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-7 | 188 | 230 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-7 | 189 | 231 | No hit | No description |
CDD | cd14708 | 1.40E-23 | 189 | 241 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-8 | 190 | 233 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 192 | 207 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.1E-32 | 270 | 345 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MASHGVGETG LSDSGPSNHH LPYAALHGIN APSTSFFNQE GSPFDFGELE EAVLQGVKIR 60 NDEAKAPLFR PAATLEMFPP WPIRFQQTPR GSSKSGGEST DSGSAVNTLS SKAEAQLDSD 120 SPISKKASSS DHHQAFDQKH LQLQQHQQQM EMASNTSRTG APSELNPSPA KLPQEKRKGS 180 TSEKQLDAKT LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLTQLEQDLQ RARQQGLFLG 240 GCSGVGGNIS PGAAIFDMEY ARWLEDDHRH MSELRTGLQA HLSDGDLRVI VDRYISHYDE 300 IFRLKGVAAK SDVFHLVTGM WSTPAERCFL WMGGFRPSEL IKMLTSQLDP LTDQQIVGIC 360 SLQHSSQQAE EALSQGLEQL QQSLVDTIAS GQIVDGMQQM AVALGKLANL EGFVRQADNL 420 RQQTLHQLRR ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRESLMGEE NACQTGSDLQ 480 MVEPPPNHFS NF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G004100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609551.1 | 0.0 | transcription factor TGA9-like isoform X4 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A2C9VYA1 | 0.0 | A0A2C9VYA1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006304m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G004100.1.p |
Publications ? help Back to Top | |||
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