PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G192500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 50714.6 Da PI: 8.3564 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 49 | 74 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ Manes.03G192500.1.p 49 DEADCIYYLRTGFCGYGARCRFNHPR 74 6799********************96 PP | |||||||
2 | zf-CCCH | 39.1 | 1.3e-12 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Manes.03G192500.1.p 96 QPVCQYYMRTGTCKFGASCKYHHPR 120 689********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.9e-11 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ Manes.03G192500.1.p 141 GERECTYYVKTGQCKFGATCKFHHPQ 166 789*********************97 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 306 | 332 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p Manes.03G192500.1.p 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332 5789*********************97 PP | |||||||
5 | zf-CCCH | 28.3 | 3e-09 | 355 | 378 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G+Ck+G+ CkF H++ Manes.03G192500.1.p 355 PTCTHYTQRGQCKFGPACKFDHPM 378 78********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.7E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.901 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.633 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 309 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 311 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-6 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 354 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-7 | 355 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 357 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MDRYGRTQEG SQSDPSPEWT APRPETGIEE GVWQLGLGEG ESGYPERPDE ADCIYYLRTG 60 FCGYGARCRF NHPRDRGAVI GAARAGAGQF PERVGQPVCQ YYMRTGTCKF GASCKYHHPR 120 QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGQCKFGATC KFHHPQPANL QIPAQSLAPQ 180 VAPVPAPVAA PGLYPTMQSP SVPSTQQYGI VVARPPLLPS SYVQGPYGPM LFSPGVVSYP 240 SWSSYPAPVS PVASPSTQAG VGSGSVYGIT QLSPSAPAYT GIYQPMSTSI GPSSSSQKEH 300 SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPM RPGAPTCTHY 360 TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSAIGTLAPS SSSSELRPEL 420 ISGSSKDSSS TRMSSSSSTS SGLVGSTFSK SGPVPHSGVQ QSSHSSGPST GSITEAHTSS 480 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G192500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607312.1 | 0.0 | zinc finger CCCH domain-containing protein 34-like isoform X1 | ||||
Swissprot | Q84W91 | 1e-169 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2C9WB84 | 0.0 | A0A2C9WB84_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006608m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-137 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G192500.1.p |