PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G176200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29404.9 Da PI: 9.4858 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.6 | 3.4e-11 | 137 | 244 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfv 80 f+k+lt+sdv +rl++ k + ++ ++++ ++++++ +d +g+++++ ++ + ++ yvlt+GWk+F +gL Dfv Manes.03G176200.1.p 137 FEKQLTSSDVRPDqSRLTMNKADVVRCllpllnreEENPCQGIKVKTYDMQGNEYDMAFKLWASK-VYVLTTGWKNFFIKHGLIeNEDFV 225 89********98769999999999999*****998777889******************999986.9****************8567999 PP EEEE-SS.SEE..EEEEE- CS B3 81 vFkldgr.sefelvvkvfr 98 ++ + ++ ++ +l++ + + Manes.03G176200.1.p 226 TIWMFRNlQTNKLCFVISS 244 9887777777777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-14 | 137 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.2E-8 | 137 | 245 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-15 | 137 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0079 | 137 | 246 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.95E-14 | 137 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MELSSTEPSS SEPSYDEKEA AEVLLCFKQA EDLLYLKHKK LDPLIAAALE ETKSNKIRQG 60 TKSKKIRQGL AGSNHGVLGQ QAKPQPQPRP EKPAAKPQLR PRLEKPAADT FFDTYEPPEI 120 PPVVGLDGLI GKCSKPFEKQ LTSSDVRPDQ SRLTMNKADV VRCLLPLLNR EEENPCQGIK 180 VKTYDMQGNE YDMAFKLWAS KVYVLTTGWK NFFIKHGLIE NEDFVTIWMF RNLQTNKLCF 240 VISSRRLPIY EPIKRRRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G176200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085562.1 | 1e-64 | putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | A0A2C9WAK8 | 0.0 | A0A2C9WAK8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032104m | 1e-171 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 4e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G176200.1.p |