PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G174900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 775aa    MW: 84100.3 Da    PI: 6.6295
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G174900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.4e-16480519241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk  
  Manes.03G174900.1.p 480 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPM 519
                          589**********************************975 PP
2TCR51.91.5e-16565603139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Manes.03G174900.1.p 565 RHKRGCNCKKSSCLKKYCECFQGGVGCSINCRCEGCKNA 603
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-17479520IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.408480605IPR005172CRC domain
PfamPF036381.5E-11482517IPR005172CRC domain
SMARTSM011141.7E-17565606IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-12567603IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDTPEKTQIT TSLSKFEDSP VFNYINSLSP IKPVKSIHIT QTFQSLNFPS VPSIFTSPHV  60
SSNKESRFLR RHNCSDPSKS EFSSEHGNKV CSDAGSGLDA AQLYDNSSEL QENFDPAVSI  120
GEVSVEPPSE HLKFAIELPQ RLKYDCGSPE CDATPRCSPQ IDCISELAGV SQKSSPECNV  180
HPQEIYHSEK KKEASDCDWE SLTSDATDLL IFSSPIGTNV FKGLMQKSVD LGASFSTSLD  240
DVHKVQIDPV DSGDQQEIEY PSTQPGETIV PKEINQIQDN LAANNNPNKC MTSNPSDEVE  300
NDVGMSSRVV SKAVSILHCG MRRRCLDFET VGARRKKLGG NSNSSTFVGG QADEKLASKD  360
KQLVPFRPGG DSSRCVLPGI GLHLNALAMT SKDSKSVKHE ASSSVINVTS TAASFHSPNT  420
GQELDESLSL AATDIDMGPI ENAVPLLEDV PQASACLVTE EFNHNSPKKK RRKLDGESEA  480
CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQECFNKPMH EDTVLATRKQ IESRNPLAFA  540
PKVIRSSETA IEIGDESSKT PASARHKRGC NCKKSSCLKK YCECFQGGVG CSINCRCEGC  600
KNAFGRKDGS APTETEAEPE DEAVGGENSR VDRISQKNEI QNNKEQNPNS ALPMTPLALC  660
RQLLQLPFSS KSKPPRSFLS IGSSSGFCTG QKYGKPNILR PQPKSDTELQ TPGDDDMPEI  720
LRGNCSPSTG IKTSPNSKRV SPPHSILGSS PGRRNGRKLI LQSIPSFPSL TPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1748460214120Protein lin-54 homolog
5fd3_B8e-1748460214120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321336RRRCLDFETVGARRKK
2466473PKKKRRKL
3467471KKKRR
4467472KKKRRK
5468472KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G174900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607846.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2C9W8E50.0A0A2C9W8E5_MANES; Uncharacterized protein
STRINGcassava4.1_002257m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-158TESMIN/TSO1-like CXC 2