PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G148100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 316aa    MW: 33777.1 Da    PI: 6.5141
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G148100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.92.6e-344195155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Manes.03G148100.1.p 41 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 95
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-333897IPR009057Homeodomain-like
PROSITE profilePS5129412.6123898IPR017930Myb domain
SuperFamilySSF466891.97E-174097IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-244196IPR006447Myb domain, plants
PfamPF002499.8E-94394IPR001005SANT/Myb domain
PfamPF143797.9E-27142188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYSSIHSLPL DGSVGHGDFQ GSLDGTNLPG DACLVLTTDP KPRLRWTAEL HERFVDAVTQ  60
LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRLGRQSC KESNDNSKDV GIAASVAESQ  120
DTGSSTSTSS RLIAQDLNDG YQVTEALRVQ MEVQRRLHEQ LEVQRRLQLR IEAQGKYLQS  180
ILEKACKALN DQAAASAGLE AAREELSELA IKVSNECQGI VPMDNIKMPS LSELAAALEN  240
KSTANLPARI GDCSVESCLT STGSPVSPMG VGSQAAGAGA ASIKKRPRSA FGNGDSVPLE  300
GNIRQEVEWM MSNIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-204197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-204197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-204197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-204197157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G148100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607963.10.0protein PHR1-LIKE 3-like
SwissprotQ8LAJ71e-140PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A2C9W7R10.0A0A2C9W7R1_MANES; Uncharacterized protein
STRINGcassava4.1_012160m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-125G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]