PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G137800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 537aa    MW: 59881.6 Da    PI: 5.5922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G137800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.91.3e-1391675362374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          + +L +cA+av+++d+   ++l+++l++ +s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e ++++++++ev+P++
  Manes.03G137800.1.p 167 KAALCACAQAVANNDMLTFEWLMTELRQKVSVSGEPIQRLGAYMVEGLVARLASSGSSIYKALRCKEPA---SAELFSYMHILYEVCPYF 253
                          679*****************************************************************9...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+++ aN aI ea++ e++vHiiDf+isqG QW++L+qaLa++p+gpp++R+Tg+++++s   +   l  +g+rL+++A++++vpfef+
  Manes.03G137800.1.p 254 KFGYMSANGAIAEAMKDERKVHIIDFQISQGSQWVTLIQALAAQPGGPPHIRLTGIDDSTSAyaRGGGLDIVGQRLSRLAKSCKVPFEFH 343
                          **********************************************************998899999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + +a + ++++le+L ++pgEalaVn++l lh+l+desv ++++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+eal+yy a+f+
  Manes.03G137800.1.p 344 A-AAVSASEIQLENLGIRPGEALAVNFALTLHHLPDESVGTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLLRFTEALNYYLAVFE 432
                          *.899************************************************************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s++++lpre++eri+vE+++l+re+vn++acegaer+erhe l+kWr+r+++aGF+p+pls+++++++k+ll+ ++++ y++ee++g+l+
  Manes.03G137800.1.p 433 SIDVTLPREHKERINVEQHCLAREVVNIIACEGAERVERHEPLGKWRSRFTMAGFTPYPLSTYVNATIKTLLESYSNK-YTLEERDGALY 521
                          ****************************************************************************66.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          lgW++rpLv+ +aWr
  Manes.03G137800.1.p 522 LGWMNRPLVASCAWR 536
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.56140517IPR005202Transcription factor GRAS
PfamPF035144.4E-137167536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MQSSKKTTIM DGSQRFYDQT MGDQESYCWH PNQNVGHYPF SDDRSQEMHL SVETFEQQCT  60
LESSSGTSSY PVHNSPSTGS FSPNESAISQ LNSQSCLLDL HDSSENTSCS PDRDSYVTHK  120
LRELETAMLG PIDDLDIYNI TTPASQITSE EEKFKFLVEM MSRGDLKAAL CACAQAVANN  180
DMLTFEWLMT ELRQKVSVSG EPIQRLGAYM VEGLVARLAS SGSSIYKALR CKEPASAELF  240
SYMHILYEVC PYFKFGYMSA NGAIAEAMKD ERKVHIIDFQ ISQGSQWVTL IQALAAQPGG  300
PPHIRLTGID DSTSAYARGG GLDIVGQRLS RLAKSCKVPF EFHAAAVSAS EIQLENLGIR  360
PGEALAVNFA LTLHHLPDES VGTQNHRDRL LRLVKSLSPK VVTLVEQESN TNTAPFLLRF  420
TEALNYYLAV FESIDVTLPR EHKERINVEQ HCLAREVVNI IACEGAERVE RHEPLGKWRS  480
RFTMAGFTPY PLSTYVNATI KTLLESYSNK YTLEERDGAL YLGWMNRPLV ASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-651695367375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G137800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607536.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2C9W9F40.0A0A2C9W9F4_MANES; Uncharacterized protein
STRINGcassava4.1_034216m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]