PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G132200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 508aa    MW: 55534.5 Da    PI: 6.459
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30294352259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK  kgs++prsYYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Manes.03G132200.1.p 294 SDGCQWRKYGQKLAKGSPCPRSYYRCTMAsGCPVRKQVQRCAEDQAVLITTYEGHHNHP 352
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33278354IPR003657WRKY domain
SuperFamilySSF1182907.32E-28286354IPR003657WRKY domain
PROSITE profilePS5081129.643288354IPR003657WRKY domain
SMARTSM007743.5E-37293353IPR003657WRKY domain
PfamPF031061.9E-27295352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDLSNDRSHC CGDGYRSISN GNRMITEMDF FADGNCPKQE TKLAAIVKTE AIYDGVGQQD  60
EEDVNTGLNL LTGSSTSSDH KSMVEDGASQ NKAFYNKRKK ELELLHSKIN HMNAENQRLK  120
GILHQVNNNY YILQMHLFTL MQQHQNQNTV TVKNEVKHGA VEDRHDEGSI TARQIMDLRK  180
AEMGEDRSQS EERSRDCPIS PNIFESMEYN KSPMISCSSI TGVVPVIDHL KKSADGGIRD  240
HESPEEAFQG WVPNKIPKFD TSRDVDDEGK AEPLSIIRKA RVSVRSRSES STISDGCQWR  300
KYGQKLAKGS PCPRSYYRCT MASGCPVRKQ VQRCAEDQAV LITTYEGHHN HPLPPAAMAV  360
ASTTSAAASM LLSGSMPSPD ELMNTDLLAK TLACPPGFAT LSASAPFPTV TLDITRPPVP  420
NPSQILQGHF MSASHVSAQA LYNKAEISDL LNPHQGMELP QMIPPLANST VSAVTAAITS  480
DPNFTAALVA AVSSIIGNVQ AKYDQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23280356176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G132200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275960.0KT827596.1 Manihot esculenta WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692236.10.0probable WRKY transcription factor 31
TrEMBLA0A2C9W7570.0A0A2C9W757_MANES; Uncharacterized protein
STRINGcassava4.1_023145m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-65WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]