PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G121500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 426aa MW: 46285.9 Da PI: 9.6379 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 192 | 214 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ Fs+++ ++H + H Manes.03G121500.1.p 192 TCHKCGEQFSNWEAAENHHLSkH 214 7*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 193 | 214 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.08E-22 | 216 | 424 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.1E-7 | 223 | 401 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MPTVWLSLKK SLHCKSEPSE VHDPKSRKQL STILTKKAGR SGCSRSIANL KDVIHGSKRH 60 TEKPPTCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFG GFQDGIGNGA SNANNGPAAV 120 GGSTFVGTLR PGTPGPAGHP TMHYFNPSMR SSATPPRKSP FLLSDREGSG IFSNGGRSST 180 RETDSNGSST ITCHKCGEQF SNWEAAENHH LSKHAVTELV EGDSSRKIVE IICRTSWLKS 240 ENHCGRIERV LKVHNMQKTL ARFEEYREMV KTKANKLPKK HPRCIADGNE LLRFYGTTVA 300 CSLGLNGCSS LCVSEKCCVC RIIRNGFSAK KELKGGIGVF TTSTSGRAFE SIEIFEQDPS 360 VRKALIVCRV IAGRVHKPLD NIQQISGQTG FDSLAGKVGL YSNIEELYLL NPRALLPCFV 420 VICKT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G121500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606656.1 | 0.0 | uncharacterized protein LOC110610892 | ||||
TrEMBL | A0A2C9W6P3 | 0.0 | A0A2C9W6P3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008244m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4983 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G121500.1.p |