PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G121000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 565aa    MW: 62904.2 Da    PI: 6.274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G121000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.63.3e-1291945631373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+++++ +  ++l+a  +  +s +g+p+qRl ay+ e+L ar  +s++++y+al++ e +   s + l+++++++e++P+
  Manes.03G121000.2.p 194 LKQLLIACAKALAENNINDFDKLIAMARCAVSISGEPIQRLGAYLIEGLVARKESSGNSIYHALRCGEPE---SRDLLSYMQILYEICPY 280
                          689******************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea ++e+r+HiiDf+i+qG+QW++LlqaLa++p+g+p++RiTg+++p s+  + + le++++rLa++ e++ +p+ef
  Manes.03G121000.2.p 281 LKFGYMAANGAIAEACKNEDRIHIIDFQIGQGTQWITLLQALAAKPDGAPHVRITGIDDPVSKhaRGDGLEAVHRRLAEISEKFSIPVEF 370
                          ***********************************************************99988999*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v   + +++ e+L v+pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f
  Manes.03G121000.2.p 371 HG-VPVFTPEVTREMLGVRPGEALAVNFPLQLHHTPDESVDVRNPRDGLLRMVKSLNPKVVTLVEQESNTNTTPFLTRFIETLDYYLAIF 459
                          **.6888999******************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+ +eri vE+++l+++ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g +
  Manes.03G121000.2.p 460 ESIDVTLPRDRKERIGVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLIEKDGVM 548
                          *************************************************************************9999.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+L+s+SaW
  Manes.03G121000.2.p 549 LLGWKNRNLISASAW 563
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.789168545IPR005202Transcription factor GRAS
PfamPF035141.1E-126194563IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MESHPLFRYG VTGAGISYST SYAIAPSMPN RLFGSLNFDI GNSPSSPFSN QFDCDTIITL  60
SESQEQYSST EKLSGASPSC NSSLESSSYF HRLSPPLFQD ANSSENIKHA LLRLETALME  120
PDDDEDIRIA DTSVGESSRP QTSGQRTRAW SQEHHVIQPQ TSSVSRNKQS SEGVEKHLKT  180
IEEAKFQSVL PGNLKQLLIA CAKALAENNI NDFDKLIAMA RCAVSISGEP IQRLGAYLIE  240
GLVARKESSG NSIYHALRCG EPESRDLLSY MQILYEICPY LKFGYMAANG AIAEACKNED  300
RIHIIDFQIG QGTQWITLLQ ALAAKPDGAP HVRITGIDDP VSKHARGDGL EAVHRRLAEI  360
SEKFSIPVEF HGVPVFTPEV TREMLGVRPG EALAVNFPLQ LHHTPDESVD VRNPRDGLLR  420
MVKSLNPKVV TLVEQESNTN TTPFLTRFIE TLDYYLAIFE SIDVTLPRDR KERIGVEQHC  480
LAKDIVNVIA CEGKERVERH ELFGKWKSRL TMAGFRQYPL SSYVNSVIRG LLRCYSEHYT  540
LIEKDGVMLL GWKNRNLISA SAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-621965636374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G121000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608496.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A251L9U70.0A0A251L9U7_MANES; Uncharacterized protein
STRINGcassava4.1_004650m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]