PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G119700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 454aa MW: 50206.2 Da PI: 6.7074 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.5e-06 | 344 | 382 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Manes.03G119700.1.p 344 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 382 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 333 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-11 | 343 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.24E-7 | 343 | 386 | No hit | No description |
SMART | SM00353 | 0.0049 | 344 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 347 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MADEFNTATN WWDSSRNRFD SGSSSSSSGL NSLGSFAWPS EVVDVKGRPS IESSSVSDSS 60 VVFHDTQKLQ QGHDSGADLH MMGLGLSSQA MDWNQALFRG DKGESSFRSM LQENLNSSTS 120 YHQHETGIGS SQVQWRERMF SGASGDPSMN HEFKQINRGF SLDQPQFSPH GSSSDSTVTC 180 QGLQSSGFQM DSTAIYGSTS TMFQGLLGSD NQQQQQQQCS FENRSMSYPY GANYGITSNE 240 LVPSWSNKVP QFLRNSPPKQ SPHSQLHFSN NAPFWNASAN SMNDVRPSFF PIQQQFPATN 300 FEEKPKQNIS EVRDSSTTLK KGASEPATKR PRNETPSPMP AFKVRKEKMG DRITALQQLV 360 SPFGKTDTAS VLSEAIEYIK FLHEQVTVLS TPYMKSGAPM HHQQSDKSNK DPEGQKQDLR 420 SRGLCLVPIS STFPVTHETT VDFWTPTFGG TFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G119700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608498.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
Swissprot | Q8GXT3 | 4e-96 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2C9W6R5 | 0.0 | A0A2C9W6R5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022409m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 3e-94 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G119700.1.p |
Publications ? help Back to Top | |||
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