PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G098700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 323aa MW: 35635.9 Da PI: 8.6988

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G098700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Edell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Manes.03G098700.1.p 31 RGPWTPQEDELLANYIKKKGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 78 89****************************99**********97 PP
2	Myb_DNA-binding	47	6e-15	89	129	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Manes.03G098700.1.p 89 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 129 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-22	22	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.03	26	78	IPR017930	Myb domain
SuperFamily	SSF46689	9.9E-29	28	125	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-14	30	80	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	31	78	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-11	33	78	No hit	No description
PROSITE profile	PS51294	24.397	79	133	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-24	81	134	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	83	131	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-11	89	129	No hit	No description
Pfam	PF00249	1.0E-13	89	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MRNPSMSASS GGAQAVTMAK TPCCSKVGLK RGPWTPQEDE LLANYIKKKG EGRWRTLPKR 60 AGLLRCGKSC RLRWMNYLRP SVKRGQIAPD EEDLILRLHR LLGNRWSLIA GRIPGRTDNE 120 IKNYWNTHLS KKLISQGMDP RTHKPLKPEC LDQNKASSSK ATKSKTSSPK SNNKNPAAGA 180 GAGVEETPSG DKENVYIEST YIDYQYQITG NSNPNHGYSS LLNSGYGNCG MDFRSIIHGP 240 INEHGDINYC TDDVFSSFLN SLINEEAFTS QQHQQMQQQD NLIVPTSDPL VSLGASTFGY 300 GPSCESELMS STFNQNDPQQ EG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	4e-25	29	133	2	105	C-Myb DNA-Binding Domain
1msf_C	4e-25	29	133	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G098700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021607435.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	4e-84	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2C9W7L0	0.0	A0A2C9W7L0_MANES; Uncharacterized protein
STRING	cassava4.1_020908m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-85	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Manes.03G098700.1.p

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]