PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G077500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 328aa    MW: 36516 Da    PI: 7.5047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G077500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Manes.03G077500.1.p 13 KGLWSPEEDEKLINHITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                         678*******************************************97 PP
2Myb_DNA-binding538e-1766109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Manes.03G077500.1.p  66 RGSFSAQEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26563IPR009057Homeodomain-like
PROSITE profilePS5129417.596860IPR017930Myb domain
SuperFamilySSF466892.08E-2910107IPR009057Homeodomain-like
SMARTSM007171.2E-121262IPR001005SANT/Myb domain
PfamPF002494.7E-151360IPR001005SANT/Myb domain
CDDcd001672.17E-111660No hitNo description
PROSITE profilePS5129425.94961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2564116IPR009057Homeodomain-like
SMARTSM007176.7E-1665113IPR001005SANT/Myb domain
PfamPF002493.3E-1566109IPR001005SANT/Myb domain
CDDcd001676.40E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGHRCCTKQK VKKGLWSPEE DEKLINHITT YGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPKTHNLIPS RQRSNNKFAQ AQAIILQSHQ QPFSIITVNS QMRDVSMEMN SPILTPPAAP  180
PDITQQPSSL QTSSGPSIFT SGDHQNPNIL WTANGRQNSL DSAVFPSIQS TLISRASSPV  240
NGLLDENFSW GSNPIGENFE APRMEVVKAQ EQENNQAKEN VDAANGVQDM DASFDSSCFG  300
LDFVESTLFS SSMCRELSSM DDLAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G077500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608897.10.0myb-related protein 308-like
TrEMBLA0A2C9W5H60.0A0A2C9W5H6_MANES; Uncharacterized protein
STRINGcassava4.1_031923m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-88myb domain protein 67