PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G076000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 514aa    MW: 55546.5 Da    PI: 8.0736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G076000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-11160184226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C +++ t tCk+Gd+CkF H+
  Manes.03G076000.1.p 160 GEKDCAHYMLTRTCKFGDSCKFDHP 184
                          7889********************8 PP
2zf-CCCH36.21e-11211237127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C++f++t  CkyG++CkF+H++
  Manes.03G076000.1.p 211 PGEPDCPYFLKTQRCKYGAKCKFNHPK 237
                          5789*********************96 PP
3zf-CCCH37.93e-12259283327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C f+++tG Ck+G++CkF+H++
  Manes.03G076000.1.p 259 EPTCTFYMKTGKCKFGATCKFHHPK 283
                          689********************96 PP
4zf-CCCH38.32.3e-12339362326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++ C+f+++tG CkyG++C+++H+
  Manes.03G076000.1.p 339 EVDCPFYLKTGSCKYGATCRYNHP 362
                          689********************9 PP
5zf-CCCH41.42.3e-13412436226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C+++++tG+Ck+G+rCkF+H+
  Manes.03G076000.1.p 412 GQTECDYYMKTGECKFGERCKFHHP 436
                          6789********************8 PP
6zf-CCCH39.78e-13468489627
                          -SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                          C+++++tGtCkyG++CkF H+p
  Manes.03G076000.1.p 468 CPYYMKTGTCKYGATCKFDHPP 489
                          ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507158186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5159185IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8160184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4164183IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263210238IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9212237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5215238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5216237IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413256284IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9259283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6260283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5262282IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802336364IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10339362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5340364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4342361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478410438IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7410437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6410438IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-11412436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5416436IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6462489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666462490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6466489IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10468489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5468487IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MANKLYGYSS SYGVAAPSSS AAAAYTPRSV TEQYLSDAAL SRYLGAYSDA DPSKYSVTSM  60
YLTQSEALRY SADRGITSAA ASAASHLAPW TPPPGVDVSA SVEPLLAGIK RSTEVLYHPT  120
FFGAHNTFGQ SEAWYSTNSL AKRSRFESAS NLPIYPQRPG EKDCAHYMLT RTCKFGDSCK  180
FDHPIWVPEG GIPNWKEVPL VATLESLPER PGEPDCPYFL KTQRCKYGAK CKFNHPKDAL  240
FQDGLENTDV SALPERPSEP TCTFYMKTGK CKFGATCKFH HPKDIQILSG QENGNTLKNE  300
SAVKIDDEIS GHVNVANASI SSTPALFHNS KGLPIRLGEV DCPFYLKTGS CKYGATCRYN  360
HPDRNGHSVV ATPAANLNIG VVPAASLYQT VDPRLGHSTL GVGMTVYPQR PGQTECDYYM  420
KTGECKFGER CKFHHPIDRS ASAAKQAQEQ TVKLTLAGLP RREGAVHCPY YMKTGTCKYG  480
ATCKFDHPPP GEVMAIAASQ GTSTSTGVDA NGG*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G076000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818007e-76LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132557e-76LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607514.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2C9W5I60.0A0A2C9W5I6_MANES; Uncharacterized protein
STRINGcassava4.1_005754m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)