PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G072300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 327aa    MW: 36908.7 Da    PI: 7.7616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G072300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-121360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l++ ++     +W+++++  g+ R++k+c++rw +yl
  Manes.03G072300.1.p 13 KGLWSPEEDEKLIKFITTRAHVSWSSVPKLAGLQRCGKSCRLRWINYL 60
                         678****************999************************97 PP
2Myb_DNA-binding52.61.1e-1666109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T++E++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Manes.03G072300.1.p  66 RGSFTAQEEKTIIDVHRILGNK-WAQIAKHLP-GRTDNEIKNFWNS 109
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-22463IPR009057Homeodomain-like
PROSITE profilePS5129414.27860IPR017930Myb domain
SuperFamilySSF466893.26E-2610107IPR009057Homeodomain-like
SMARTSM007175.6E-81262IPR001005SANT/Myb domain
PfamPF002498.5E-111360IPR001005SANT/Myb domain
CDDcd001671.86E-71660No hitNo description
PROSITE profilePS5129425.13261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-2664116IPR009057Homeodomain-like
SMARTSM007174.6E-1565113IPR001005SANT/Myb domain
PfamPF002492.4E-1566109IPR001005SANT/Myb domain
CDDcd001673.24E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGHHCCSKQK VKKGLWSPEE DEKLIKFITT RAHVSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT AQEEKTIIDV HRILGNKWAQ IAKHLPGRTD NEIKNFWNSC IKKKLIAQGL  120
DPNTHKLLSP NYAQSYNNNT ACTPSADSHY QPTSSSSVFH ATSQMKDLSM DVKETPFTPS  180
LTSIASHDAN YFCLHPLHIS STLTTFCEHQ NSNIQALLDH ASQSSPMGSV PISCSATNPS  240
GFGIIDEKNL WGGYTEPIQP LRNEQMKVEQ AVQFERTSEV YAGQNMDSLF QSSNFNFHFM  300
ECTQMPEMYY SVNPIDQLTW DSQILQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G072300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346548e-87KM034654.1 Jatropha curcas clone JcMYB034 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605842.10.0myb-related protein 308-like
TrEMBLA0A2C9W5C60.0A0A2C9W5C6_MANES; Uncharacterized protein
STRINGcassava4.1_027684m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-81myb domain protein 67