PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G063600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

S1Fa-like

Protein Properties

Length: 92aa MW: 10024.8 Da PI: 10.1892

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G063600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.8	1.7e-41	24	91	3	70
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v+ +eakG+nPGlivll+vggl+l+fl+gny+lyvyaqk+lPP+kkkP+skkk+kre+lk Gv++PGe Manes.03G063600.1.p 24 VKDIEAKGFNPGLIVLLLVGGLVLTFLIGNYALYVYAQKTLPPKKKKPISKKKMKRERLKHGVSAPGE 91 6789***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	7.0E-7	24	91	No hit	No description
Pfam	PF04689	8.6E-40	27	91	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MDVEDGFEFA DHSPPSFQNV GNVVKDIEAK GFNPGLIVLL LVGGLVLTFL IGNYALYVYA 60 QKTLPPKKKK PISKKKMKRE RLKHGVSAPG E*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G063600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021607403.1	4e-60	DNA-binding protein S1FA-like
Swissprot	Q7XLX6	8e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A2C9W517	8e-59	A0A2C9W517_MANES; Uncharacterized protein
STRING	XP_002525167.1	2e-36	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	4e-06	S1FA-like DNA-binding protein

Link Out ? help Back to Top
Phytozome	Manes.03G063600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]