PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G062000.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 521aa    MW: 56986.2 Da    PI: 8.428
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G062000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.46.8e-14130169242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          + k+CnCk+s+Clk+YCeCfaag +C+  C+C +C N+ e+
  Manes.03G062000.2.p 130 KIKRCNCKNSQCLKLYCECFAAGLHCNG-CNCLNCYNNVEN 169
                          679*************************.********9875 PP
2TCR51.61.9e-16214252139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN+
  Manes.03G062000.2.p 214 KHNKGCQCKKSGCLKKYCECFQANILCSDNCKCMDCKNS 252
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-13129169IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.895130254IPR005172CRC domain
PfamPF036385.6E-11132166IPR005172CRC domain
SMARTSM011146.9E-19214255IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-13217252IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGQSEAISDF APKKLARQLE FTAICRSSAN VALTPSQEPQ PHLNLQPHAP QPPPQQVQRQ  60
PLSHFQLQTP PKQASAMAQF HARSEQVPVA RRIPHPAENL PLTTLTLAKQ ESPGSRPRNN  120
VDAKDGTPKK IKRCNCKNSQ CLKLYCECFA AGLHCNGCNC LNCYNNVENE DARQKAVGAT  180
LERNPNAFRP KIAGSPHGSL DAREDTMDTQ MIGKHNKGCQ CKKSGCLKKY CECFQANILC  240
SDNCKCMDCK NSVGSEERRS LFHGNHNGRA CMQRTANAAI NGAIGSAGYV TPVTLEKRKS  300
KELLGSVTID QSEKYQQENH VKISATSSPS SVPVSHYATG SGASKFTYKS PLSGILQPHD  360
VKEICSLLVI LSQETTKALA GKMDRQPERE NNHSFESNSA SSTQGRGDSG HGNYARRTLS  420
DDCMDRRKTG RESNDAPGNR VDLENGRPAS PEIDLMCHEQ EIVFMEAASP IRMGVLSQNK  480
TQISSNGHEC SDVYAEQERL ILTRFQNFLS SLIACGSMKA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-3013226312132Protein lin-54 homolog
5fd3_B6e-3013226312132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G062000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096742e-33AP009674.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04O06, TM0487, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606299.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 7
TrEMBLA0A2C9W7580.0A0A2C9W758_MANES; Uncharacterized protein
STRINGcassava4.1_004978m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-101Tesmin/TSO1-like CXC domain-containing protein