PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G049100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 530aa    MW: 57231.9 Da    PI: 8.7943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G049100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+k F r  nL+ H r H
  Manes.03G049100.1.p  82 FICDICNKGFQRDQNLQLHRRGH 104
                          89*******************88 PP
2zf-C2H213.30.00025158180123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Manes.03G049100.1.p 158 WKCEKCSKRYAVQSDWKAHSKTC 180
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.36E-781104No hitNo description
Gene3DG3DSA:3.30.160.602.6E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02782104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78382104IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355220123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.36E-7153178No hitNo description
SMARTSM00355130158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MMKGLIMDES LSNLTSASGE IIASSGNRIE TPGTMYLQQS SFPSTNQAPP PKKKRNLPGN  60
PADPDAEVIA LSPKTLLATN RFICDICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVRK  120
KVYVCPEATC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESAKAITLD PILSTHQQPS SSASHMINLQ  240
SLSVKREQES FHLFNGRPSN NVPPWLACHH GPPQMNLSSS LFAENLDQTF LQHENPSPNP  300
NTTVLPSFKS SPHMSATALL QKAAQMGVTM SKPSSSLASG SGAAMLRPHQ AHMSGTTSDF  360
ISTSVATSTA GSGLGLSSSE DMGHGLAPFG NKAAATTGIV GPSSLVLDVM SSFSSASGFD  420
GSSFDEDFNG MLNPKRDGNN FQETLSNSKS TESHFSNRSE HEDKGAATTA SAGGGRHGHG  480
NDGLTRDFLG LKAFSHKDFL NLAGLGGHIN SSSSSTYEQQ NQNQAPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35154219368Zinc finger protein JACKDAW
5b3h_F2e-35154219368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108120KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G049100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608134.10.0protein indeterminate-domain 12-like isoform X1
SwissprotQ9LRW71e-124IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2C9W7550.0A0A2C9W755_MANES; Uncharacterized protein
STRINGcassava4.1_005370m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-119indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]