PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G048400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 262aa MW: 29911.5 Da PI: 6.9147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G048400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.8	6.6e-37	11	112	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCaaCk++rr+Ca+dC+lap+fp++++++f n+hklFG++n++++lk+lp+ e +++a++s++y+A+ar++dPv G++++i++l+ q+e Manes.03G048400.1.p 11 ACAACKYQRRRCAPDCALAPHFPSNRASDFLNAHKLFGVRNIVRTLKKLPTFEeKKHAITSMIYQANARVSDPVGGCHRIITQLKTQIEF 100 7**********************************************765549******************************* PP DUF260 90 lkaelallkeel 101 + +l+l+++++ Manes.03G048400.1.p 101 YELQLNLVRQQI 112 ******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.924	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-34	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MRPNTPGGNQ ACAACKYQRR RCAPDCALAP HFPSNRASDF LNAHKLFGVR NIVRTLKKLP 60 TFEEKKHAIT SMIYQANARV SDPVGGCHRI ITQLKTQIEF YELQLNLVRQ QIAFHQRLTS 120 HNLQDSTPLN VYDDVQLQQH EEPSIVHVDY QHPHNYNSFD DVVASHHLKD SPPLNIYDSA 180 QLHPIGYVEQ QQQQQQEEPA IVKIESEELS SSCLGENDSQ LSPSSKQHFA VDEIIFQMIH 240 SRDYSFEKNP QFKFSFLSCK A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-25	3	112	3	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-25	3	112	3	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G048400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605841.1	1e-165	LOB domain-containing protein 7-like
Swissprot	Q9LRW1	2e-34	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2C9W4N3	0.0	A0A2C9W4N3_MANES; Uncharacterized protein
STRING	cassava4.1_026092m	1e-142	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27815	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-36	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Manes.03G048400.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]