PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G034200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 605aa    MW: 68292.3 Da    PI: 6.9915
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G034200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06346367526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C +f+  G C +G+ CkF H+
  Manes.03G034200.1.p 346 VCIDFLIKGKCERGPDCKFKHD 367
                          5********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.15E-447232No hitNo description
PROSITE profilePS5010312.333309337IPR000571Zinc finger, CCCH-type
SMARTSM003560.085311336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5313336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5313336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173341369IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-4343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5344367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4346368IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4346367IPR000571Zinc finger, CCCH-type
PfamPF046771.4E-36381498IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541975.1E-6386462IPR011146HIT-like domain
PfamPF046762.9E-18523603IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLY KRVHSVNKSA GPFDALFCVG QFFPDSPELL EEFMDYVEGR  60
TQIPLPTYFI GDYGVGAPKV LSVASKNSAN LGFKMDGLKI CENLFWLRSS GKFTLFGLSV  120
AYLSGRQSSE TQQFGTYSQD DVDALRALAD EPGIVDLFLT NEWPSGVTNR TTSDVPAGIS  180
DSAGRDSTVA ELVAEIKPRY HIAGTKGIFY AREPYSNIDA VHVTRFFGLA SVGNKDKQKF  240
IHAICPTPGS TMTAAEISMK PPNTTLSPYT FLEQKDQPKD PNKRPSESAS DSQYWRYDVS  300
QKRQRTGTGD GDKLCFKFIY SDSCPRGEKC HFRHDMDARE QYLRGVCIDF LIKGKCERGP  360
DCKFKHDLQS EVESYSHKRH GSQNSNRSKE CWFCLSSPSV ESHLIISIGE NYYCALAKGP  420
LVQDHVLLMP IEHSPSTLSL PQECESELVR FRNSLKLYFK NRGKEFIAFE WVSKRVTHAN  480
LQAVPVPSSK AAAVQDIFNM AADKLGFKFV AKKFDDNSDG RKWLRTQFDR NYSFFYVELP  540
DGTILSHLVE ENERFPMQFG REVLAGLLNT PERADWRTCT LNKEEETNMV EEFKKKFEEL  600
DPTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U2e-12389577673862CWF19-like protein 2
6id1_U2e-12389577673862CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G034200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6555991e-115JQ655599.1 Hevea brasiliensis microsatellite HB 41 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608542.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2C9W6C70.0A0A2C9W6C7_MANES; Uncharacterized protein
STRINGcassava4.1_003920m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923