PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G023000.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 596aa    MW: 64395.9 Da    PI: 7.0125
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G023000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.53.1e-14113152242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  Manes.03G023000.3.p 113 RQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 152
                          689*************************.********9875 PP
2TCR50.93.1e-16197236140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Manes.03G023000.3.p 197 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 236
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-15112152IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.761113237IPR005172CRC domain
PfamPF036388.5E-11114149IPR005172CRC domain
SMARTSM011148.4E-20197238IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12200235IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MGEGEGSEFP PKKAAQLDTQ GSSDFPAKKL ARQLDFTQGN ATLSDHHHSE QQQPATLPLP  60
QSQLQQQQPQ PQAVTISAAP PPQQHLPARI LKPESPKSKP RPNAELKDGT PKRQKQCNCK  120
HSRCLKLYCE CFASGTYCDG CNCVNCYNNV ENEAARREAV EATLERNPNA FRPKIASSPH  180
GTQDSREENG EGLVLGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE  240
TQALFHGDHA NNIAYMQQAT NAALTGAIGS SGYASPPVSK KRKVQELFFG PTAKDPSFHR  300
LGHLQQVVHI RPSATSSSLS TNPVARAAST ATLGPSKFTY RSLLADIIQP QDLKELCSVL  360
VVVSGEAAKT LSDQRNATEQ QVQNQTETSL ASSTQERLQS QKETDVEKII ADDCSSANQA  420
DKVGPYDSSS DGADVPKGRP MSPGTLALMC DEQDTIFMAA ASPNRLTGHV CSGTSQLPCG  480
QGMTEIYAEQ ERIVLTKFRD CLNRLITFGE IKETKCSSLA KTELGNQKDQ LSNGTLNAWA  540
ELENQQGSHS NGVSKHVIPP PSNTAQTAAT MVAASSNEIP QVQAPPQNED NKPMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-321042461132Protein lin-54 homolog
5fd3_B8e-321042461132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G023000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607857.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_021607859.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A251L6440.0A0A251L644_MANES; Uncharacterized protein
STRINGcassava4.1_023118m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein