PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G023000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CPP | ||||||||
Protein Properties | Length: 596aa MW: 64395.9 Da PI: 7.0125 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.5 | 3.1e-14 | 113 | 152 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g++C+ C+C +C N+ e+ Manes.03G023000.1.p 113 RQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 152 689*************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 197 | 236 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Manes.03G023000.1.p 197 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 236 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-15 | 112 | 152 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.761 | 113 | 237 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.5E-11 | 114 | 149 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 197 | 238 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 200 | 235 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MGEGEGSEFP PKKAAQLDTQ GSSDFPAKKL ARQLDFTQGN ATLSDHHHSE QQQPATLPLP 60 QSQLQQQQPQ PQAVTISAAP PPQQHLPARI LKPESPKSKP RPNAELKDGT PKRQKQCNCK 120 HSRCLKLYCE CFASGTYCDG CNCVNCYNNV ENEAARREAV EATLERNPNA FRPKIASSPH 180 GTQDSREENG EGLVLGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE 240 TQALFHGDHA NNIAYMQQAT NAALTGAIGS SGYASPPVSK KRKVQELFFG PTAKDPSFHR 300 LGHLQQVVHI RPSATSSSLS TNPVARAAST ATLGPSKFTY RSLLADIIQP QDLKELCSVL 360 VVVSGEAAKT LSDQRNATEQ QVQNQTETSL ASSTQERLQS QKETDVEKII ADDCSSANQA 420 DKVGPYDSSS DGADVPKGRP MSPGTLALMC DEQDTIFMAA ASPNRLTGHV CSGTSQLPCG 480 QGMTEIYAEQ ERIVLTKFRD CLNRLITFGE IKETKCSSLA KTELGNQKDQ LSNGTLNAWA 540 ELENQQGSHS NGVSKHVIPP PSNTAQTAAT MVAASSNEIP QVQAPPQNED NKPMT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-32 | 104 | 246 | 1 | 132 | Protein lin-54 homolog |
5fd3_B | 8e-32 | 104 | 246 | 1 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G023000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607857.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Refseq | XP_021607859.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A251L644 | 0.0 | A0A251L644_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023118m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G023000.1.p |