PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.03G010500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 678aa MW: 74463.8 Da PI: 6.4013 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89 | 4.3e-28 | 196 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Manes.03G010500.2.p 196 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEKLTRENVASHLQKYRL 249 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.8 | 1.9e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ + ll+++l++ +y +v++++++ +al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++++++ + Manes.03G010500.2.p 20 VLAVDDDPTCLLLLETLLRRCQY-NVTTTSQAIAALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYSDPKLVMK 107 799********************.***************888888*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Manes.03G010500.2.p 108 GITHGACDYLLKPVRMEELKN 128 ******************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.8E-161 | 1 | 670 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-42 | 17 | 170 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-37 | 17 | 142 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.2E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.888 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.7E-24 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.66E-24 | 21 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-30 | 193 | 254 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.565 | 193 | 252 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.14E-20 | 193 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-25 | 196 | 249 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-7 | 198 | 248 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 678 aa Download sequence Send to blast |
MTVEQGIGEP RDQFPIGMRV LAVDDDPTCL LLLETLLRRC QYNVTTTSQA IAALKMLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAYS DPKLVMKGIT HGACDYLLKP 120 VRMEELKNIW QHVIRRRKFD NKDWNNFDNQ DKLHHGSDET TADHKLNKKR KDQNEDEDED 180 RDDNGHENED PTTQKKPRVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM NVEKLTRENV 240 ASHLQKYRLY LKRISAVANQ QATMAALGSP DASYLQMGPV NGLGFPNLAG TGQFHNATFR 300 SFPPSGMLGR LNSPAALGMR GLPSAGVIQI GHLPTTGQLT SSQSQFQSII HPRNGGNVLQ 360 GMPMSLEFDQ VHSNKVVTYI RDTDVNDTTT PSVSSGFLDA KIMAGSSNGP LLGVSNKSLM 420 LEGNALEAQD GQKFGKQSSL AVASLSLDSG FSSNFLDNGS CNDSWSSSVH STGIQSNSFA 480 LNECFQQATM HPSNIRDCVS TMASQSGNNA SHVSSISSMP IHLQDSKADV HCQIASITSN 540 ARQMINNAPQ RWDDRRQDAS CRSNAVCCSI NSGVPIHGTG NPMGQSLDPN DVILDRTKNF 600 NSTRQPNIVD PSPMKHDEVE NLTMESLMRS NEGYAVGQQN QQGSHVSNNF GSLEDLACVM 660 VKQALVAKHT EDEHLLT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-26 | 192 | 255 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.03G010500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607937.1 | 0.0 | two-component response regulator ARR12-like isoform X2 | ||||
Swissprot | P62598 | 1e-142 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A2C9W3D5 | 0.0 | A0A2C9W3D5_MANES; Two-component response regulator | ||||
STRING | cassava4.1_002915m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-128 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.03G010500.2.p |