PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G006000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CO-like | ||||||||
Protein Properties | Length: 328aa MW: 36417.9 Da PI: 6.5889 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.3 | 3.1e-08 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C ++ H Manes.03G006000.1.p 4 KLCDSCKSATATLFCRADSAFLCINCDSNVHAA 36 68***************************9954 PP | |||||||
2 | zf-B_box | 27.8 | 5.3e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ Manes.03G006000.1.p 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91 689*****************************66899999*99986 PP | |||||||
3 | CCT | 68.6 | 1.7e-23 | 266 | 309 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Manes.03G006000.1.p 266 REARVLRYKEKRKNRKFEKTIRYASRKAYAEMRPRIKGRFTKRS 309 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-13 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.836 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.2E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.44E-10 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.893 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-7 | 46 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.04E-9 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3E-10 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-17 | 266 | 308 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.36 | 266 | 308 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MASKLCDSCK SATATLFCRA DSAFLCINCD SNVHAANKLA SRHARVWVCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYELVGS DPAVKPNINF LDDSYFSDVD 120 GDAVVSREEV EAASWLLPNH PNPKMMESPD LNTNHYVFSD MEPYLDLDYG PSPSVYPKLE 180 AYEQNDSTTD GVVPVQSKSV QAPLVNDHYF GLDFTASKPL AYGYNTQSGC PSHIVSSSYL 240 DVGVVPDGGN MMESTNQKVQ LSAVDREARV LRYKEKRKNR KFEKTIRYAS RKAYAEMRPR 300 IKGRFTKRSN SEVDRSSIYE FGVVPSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G006000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607441.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4-like | ||||
Swissprot | Q940T9 | 1e-136 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A2C9W3E1 | 0.0 | A0A2C9W3E1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011725m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-137 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G006000.1.p |