PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G005400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 582aa MW: 66984.6 Da PI: 9.6381 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.9e-18 | 20 | 98 | 10 | 98 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k++++++p +f+ ++ +g+k +l+ ++g+ W vk+ + +s +++GWk+Fv++++L +gDf+vF+++g++ f v+vf+ Manes.03G005400.1.p 20 GFKHQQFSIPVSFF-KYlKGQK--CERAILRGRTGKIWPVKI--NSRS----FEDGWKDFVEDHDLHVGDFLVFRHEGEMVF--DVMVFE 98 68999*********.5547774..3479**************..7776....9**********************9999998..777776 PP | |||||||
2 | B3 | 69.4 | 4.8e-22 | 162 | 253 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 v ++s++ k++ l +p kfa++hg+ + ++ +++l++e+grsW + +k++g++++++GW +F +an+Lk+gD+++Fk+++ +++ Manes.03G005400.1.p 162 VVKLTSYSAKRCKLHIPIKFARTHGLCN-SNCKMILMNEKGRSWPAVS-WnKKSDGQVYIGRGWTSFRDANNLKAGDSFIFKHIE-KQKI 248 55669*******************8774.5669************999.62555555*************************997.5555 PP .EEEE CS B3 92 lvvkv 96 +++k+ Manes.03G005400.1.p 249 PTFKF 253 66665 PP | |||||||
3 | B3 | 45.9 | 1e-14 | 333 | 422 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ++s+ +++l++p +fa+ +++++++ +++l d +grsW kl ++ ++gr ++ W+ F an+L gD+++++l++ +++ + Manes.03G005400.1.p 333 VAKVTSYGACRSILYIPTTFARLNNLNNRR-CKMILVDAKGRSWPAKLWHKTSDGRAYIH-DWNAFRVANDLHPGDSFILELVD-KGEMP 419 56679*******************999766.59***************667777788888.9*******************987.66656 PP EEE CS B3 93 vvk 95 v+k Manes.03G005400.1.p 420 VFK 422 665 PP | |||||||
4 | B3 | 55.2 | 1.3e-17 | 455 | 542 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 v++++++ +++ l +p +fa++++++ ++s +++l++e+g+sW v l ++k+g+++++ GW+eF+kangL+e+ +++++l++ + ++ Manes.03G005400.1.p 455 VTVKAYHIQNSYLQIPSDFARRNDLIGKCS-EMILTNERGNSWVVSL-ETGKDGKVYIGCGWSEFAKANGLRERNIFMLELVE-GGNKPA 541 667899999**************9997676.****************.4777778*************************986.444455 PP E CS B3 94 v 94 + Manes.03G005400.1.p 542 M 542 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-23 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-21 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.87E-18 | 11 | 97 | No hit | No description |
SMART | SM01019 | 5.0E-17 | 13 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-14 | 21 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.746 | 28 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-21 | 156 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-20 | 157 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.16E-19 | 159 | 255 | No hit | No description |
SMART | SM01019 | 3.7E-21 | 160 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.126 | 160 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-20 | 161 | 255 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-16 | 327 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-16 | 329 | 422 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.45E-16 | 330 | 422 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 331 | 426 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-12 | 332 | 427 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-12 | 334 | 422 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-19 | 444 | 538 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 450 | 543 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-14 | 451 | 545 | No hit | No description |
SMART | SM01019 | 1.6E-14 | 452 | 548 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.676 | 452 | 548 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 454 | 543 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MATEKILSSK PHFLQPVLPG FKHQQFSIPV SFFKYLKGQK CERAILRGRT GKIWPVKINS 60 RSFEDGWKDF VEDHDLHVGD FLVFRHEGEM VFDVMVFESS ACLREYPSFP AKEFDIKEEE 120 IEFQEEQLAQ KSSPEKYNKK EQNRTTLQGK AATSVHEQHY FVVKLTSYSA KRCKLHIPIK 180 FARTHGLCNS NCKMILMNEK GRSWPAVSWN KKSDGQVYIG RGWTSFRDAN NLKAGDSFIF 240 KHIEKQKIPT FKFHRFYEGL LQANTEAKME PTYQEVHAGS LSIRHHHISV SKKKTAEEVE 300 KECRPRKPKK KQQCATNYEV KASSSVLEQP YFVAKVTSYG ACRSILYIPT TFARLNNLNN 360 RRCKMILVDA KGRSWPAKLW HKTSDGRAYI HDWNAFRVAN DLHPGDSFIL ELVDKGEMPV 420 FKMSMMKVNT KTDSEMIHQD GEASSSSIRH PYFYVTVKAY HIQNSYLQIP SDFARRNDLI 480 GKCSEMILTN ERGNSWVVSL ETGKDGKVYI GCGWSEFAKA NGLRERNIFM LELVEGGNKP 540 AMKFYGVEQR TAGNKISYKD SAQRISFENC EDVKPIIQHP E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G005400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607556.1 | 0.0 | putative B3 domain-containing protein REM15 isoform X3 | ||||
TrEMBL | A0A2C9W3G2 | 0.0 | A0A2C9W3G2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031416m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16161 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 6e-62 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G005400.1.p |