PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G194200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 426aa MW: 45005.6 Da PI: 8.5014 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.8 | 1.1e-39 | 90 | 200 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG++ d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ Manes.02G194200.1.p 90 PTTKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKYDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGVTVSAPss 179 5789*****************************************************************999866666666654444422 PP TCP 89 ....................k 89 + Manes.02G194200.1.p 180 ksaplhgglafydanngsenR 200 234444444444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-37 | 96 | 231 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.047 | 96 | 150 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MVLMESQSSN QQNLNSSSSK DHHHGHKQES SAAASLQLVS FETQTSQLQQ RGSTAATTTI 60 SQGPFMGSIS NQITVHPSTS NSNSSALTKP TTKRPSKDRH TKVDGRGRRI RMPALCAARV 120 FQLTRELGHK YDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS GVTVSAPSSK 180 SAPLHGGLAF YDANNGSENR RVIIGSNTPT LGFHHQPYPY HTLVSDENYI RKTHRDDLFK 240 ETTTTRQEST ETANPPSSNK PPVAAAARTG IEDHQEQGST RSSNILATPA MWAVAPAATN 300 GGNAFWMLPV GGATTTTTAA AIPEPQVWTF PAAGVTSMQR VSFRGGGRMS PVQLGSMMVH 360 QAVGGQQLGL GVGESNIGIL GGGGSGSGAN AYSSRFGLGM NLEQHNQQNQ QQGSDSDDEN 420 PTDSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G194200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603740.1 | 0.0 | transcription factor TCP23-like | ||||
Swissprot | Q9LQF0 | 2e-76 | TCP23_ARATH; Transcription factor TCP23 | ||||
TrEMBL | A0A2C9WI20 | 0.0 | A0A2C9WI20_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024743m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 5e-63 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G194200.1.p |