PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G190700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 526aa MW: 58482.3 Da PI: 7.0357 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.8e-07 | 273 | 294 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Manes.02G190700.1.p 273 FCTICGKGFKRDANLRMHMRGH 294 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.25E-5 | 270 | 297 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 272 | 299 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 272 | 294 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-6 | 273 | 323 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 274 | 294 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 37 | 321 | 354 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 21 | 359 | 381 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MDHKDRLCQE TWAKASSSGN ELAKKVCTKK PSFTNFNFHS HQYQQKWEDT SIFGIRTGPP 60 FQEFNPQSEN QSFIPSNPND HIKIVDRDVS QSNETLQINK IPDWDPRAML NNLSFLEQKI 120 HQLQDLVHLI VGRRGQVLEQ AEELLAQQQQ LIIADLTSII AQLISTSGSL LPSVKHTLSA 180 ITSPVGQLGG ILFSSETVMS NSLQPQRSNG SKVSDQFNRM DVTGNCGTER NYSVGEHEMK 240 DEEDAEEGEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT 300 PAALAKPNRE TSSEPVLIKR YSCPFAGCKR NKDHKKFQAL KTILCVKNHY KRTHCDKSYT 360 CSRCNTKKFS VIADLRTHEK HCGKDRWLCS CGTTFSRKDK LFGHIALFQG HTPAIPPDET 420 KGPSGPSDKG EDNDVASKVA SRNNSFGSSG ATVSEAQNIM DVKGGVDDPA SYLSPLNFDA 480 CNFGGFQEFS RPPFDDSESS LSFLISSSCN YNQKTGGESN SNNLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G190700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605160.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Refseq | XP_021605161.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2C9WFC8 | 0.0 | A0A2C9WFC8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033527m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-166 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G190700.1.p |