PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G182000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 459aa MW: 48601.5 Da PI: 6.8882 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 223 | 272 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Manes.02G182000.1.p 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-14 | 223 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 223 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-37 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 223 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 223 | 281 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-11 | 224 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.52E-15 | 231 | 282 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 246 | 262 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MCLLNVKVAN QKGSGEYSRS PATTDSGDDD DHQRYPQIVT SQSGLNQPVQ VPTQSPTMFP 60 GYGGCTGEMS AMVSALSHVV SGQRAGDWGH GAGLGSVITS GYGGIGLASA SSSSSSSSPA 120 LSAYSSTSGS GFWIGQKRGR EEVGATQSMP RVYRGFGDFR SSQGDSSSSG ATVKEEAAAS 180 IIVPTMTTTT TTTTTTATTF ATAPPTSLTE TVSYEETGER RRRYRGVRQR PWGKWAAEIR 240 DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP EHVRVLPPPM ENIPVSQIPF 300 GRQPQSQLQP MPSQPPQAPP QAAILPQFFQ SQSDTMRDYW EYSQLLQSTG DLHGASSLLE 360 QMIYNQQLAS LQSNFPLSSS LSSFSSLSSS IAAPSIAASS SGSLSSLSSS TTSASFPLLL 420 AGQQLGYFQS PQNQNPPTGS DFPVPPWSDS SHYPSSTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 222 | 283 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 223 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G182000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ623717 | 9e-66 | KJ623717.1 Pyrus x bretschneideri ethylene response factor 3 (ERF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602177.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A2C9WF07 | 0.0 | A0A2C9WF07_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007311m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G182000.1.p |