PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G180900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 12925.3 Da PI: 8.8389 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 52 | 2e-16 | 67 | 113 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +Ca C +lrr+ a++Cvla+yfp +pkkf ++h++FGasn++k+l+ Manes.02G180900.1.p 67 PCATCEILRRRSAEKCVLARYFPLIEPKKFTIAHRVFGASNIIKFLQ 113 7********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.764 | 66 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-15 | 67 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MHCRLLISDH EVTLSNLLPP FHTVVDYSQK DREVCYRPLS SSAVAPSSLV ELLIGRSSRC 60 CRCCLSPCAT CEILRRRSAE KCVLARYFPL IEPKKFTIAH RVFGASNIIK FLQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G180900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2C9WFD2 | 3e-76 | A0A2C9WFD2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032310m | 2e-76 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-20 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G180900.1.p |