PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.02G180200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 37296.1 Da PI: 9.3887 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.2 | 4.1e-14 | 258 | 312 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L ke ee +ke Manes.02G180200.1.p 258 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKEERTKERF 312 679***************************************9999887776654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-12 | 254 | 316 | No hit | No description |
SMART | SM00338 | 4.1E-10 | 256 | 320 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-12 | 258 | 315 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.978 | 258 | 310 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.90E-17 | 260 | 306 | No hit | No description |
SuperFamily | SSF57959 | 3.73E-9 | 261 | 309 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 263 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MASSKMMASS KPKSSDLTSS SSSSVTARSR RASSSASASA SAKPLTAFTS FSCSSNPTRR 60 INSLTSTSSS SAASTMTVDG ILSNVYATPS AESTLLDAQI TLMDTPAPLL SETPPPAPAP 120 ATIETNHTNS SNNQEINSVL PQASKTVDDV WREIVAGRKE MKEEPDEMMT LEDFLVKTGA 180 VEVGEEDEVK MPPPERLSGG VYAFDPVPPS AFQMLDKVEG SIVGFPNETE LVAGRGGNVV 240 GRGKRGRTLV MEPLDKAAQQ RQRRMIKNRE SAARSRERKQ AYQVELESLA VRLEEENEQL 300 LKEKEERTKE RFKQLMEKVV PVVEKRRPPR RLRRVHSLQW * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.02G180200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605243.1 | 0.0 | G-box-binding factor 4-like | ||||
Swissprot | P42777 | 1e-60 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A2C9WHL3 | 0.0 | A0A2C9WHL3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012477m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44080.1 | 1e-41 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.02G180200.1.p |