PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G179000.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 447aa MW: 50941 Da PI: 6.6446

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G179000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.3	2.6e-25	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+++v++Li+a+++++e++ +++ +kk++W+ vsk+m+ergf++sp+qC++k+++lnkryk++++ +++ +++++++ Manes.02G179000.2.p 121 KWTEKMVRLLITAVSYIGEDMCSDCeggmrrklavlQKKGKWKLVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDVLGRGtSCQVVEN 210 7******************999888899999999********************************************56999988 PP trihelix 79 cpyfdql 85 +++d + Manes.02G179000.2.p 211 PALLDVI 217 8887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-23	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLSQGGM VPGGAPFGGL DLQGSIRLSH QAQYAHAVHQ QQHPVQRQGS LIHPSVHEAF 60 PLTIGTVNNS DQAISMTNYN KGDKGKILAS DEDEPSYTDD GADGHNEASR GKKGSPWHRV 120 KWTEKMVRLL ITAVSYIGED MCSDCEGGMR RKLAVLQKKG KWKLVSKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKRLNDVLG RGTSCQVVEN PALLDVIDYL TDKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDKDDMKR YQQVDLDEDD QEVETDDHDE 300 FEGSPTSRGD SKGIYGISGG SMKRLRHGQG HEDACFGNSS QDGNKGSYSH LQIGQVDMNQ 360 MSSEITRAAW SQKQWLESRT LQLEEQKLQI QLEMLELEKQ RVKWKRFSKK RDHELENMRM 420 ENERMKLENE RMALELKRKE FGVDFN*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLSQGGM VPGGAPFGGL DLQGSIRLSH QAQYAHAVHQ QQHPVQRQGS LIHPSVHEAF  60
PLTIGTVNNS DQAISMTNYN KGDKGKILAS DEDEPSYTDD GADGHNEASR GKKGSPWHRV  120
KWTEKMVRLL ITAVSYIGED MCSDCEGGMR RKLAVLQKKG KWKLVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDVLG RGTSCQVVEN PALLDVIDYL TDKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDKDDMKR YQQVDLDEDD QEVETDDHDE  300
FEGSPTSRGD SKGIYGISGG SMKRLRHGQG HEDACFGNSS QDGNKGSYSH LQIGQVDMNQ  360
MSSEITRAAW SQKQWLESRT LQLEEQKLQI QLEMLELEKQ RVKWKRFSKK RDHELENMRM  420
ENERMKLENE RMALELKRKE FGVDFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G179000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021604503.1	0.0	uncharacterized protein LOC110609317
Refseq	XP_021604504.1	0.0	uncharacterized protein LOC110609317
TrEMBL	A0A251LK10	0.0	A0A251LK10_MANES; Uncharacterized protein
STRING	cassava4.1_022469m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-135	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Manes.02G179000.2.p