PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G179000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 50941 Da PI: 6.6446 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.3 | 2.6e-25 | 121 | 217 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt+++v++Li+a+++++e++ +++ +kk++W+ vsk+m+ergf++sp+qC++k+++lnkryk++++ +++ +++++++ Manes.02G179000.1.p 121 KWTEKMVRLLITAVSYIGEDMCSDCeggmrrklavlQKKGKWKLVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDVLGRGtSCQVVEN 210 7********************999888899999999**********************************************56999988 PP trihelix 79 cpyfdql 85 +++d + Manes.02G179000.1.p 211 PALLDVI 217 8887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-23 | 119 | 244 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MEGNLSQGGM VPGGAPFGGL DLQGSIRLSH QAQYAHAVHQ QQHPVQRQGS LIHPSVHEAF 60 PLTIGTVNNS DQAISMTNYN KGDKGKILAS DEDEPSYTDD GADGHNEASR GKKGSPWHRV 120 KWTEKMVRLL ITAVSYIGED MCSDCEGGMR RKLAVLQKKG KWKLVSKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKRLNDVLG RGTSCQVVEN PALLDVIDYL TDKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRSK DDHDKDDMKR YQQVDLDEDD QEVETDDHDE 300 FEGSPTSRGD SKGIYGISGG SMKRLRHGQG HEDACFGNSS QDGNKGSYSH LQIGQVDMNQ 360 MSSEITRAAW SQKQWLESRT LQLEEQKLQI QLEMLELEKQ RVKWKRFSKK RDHELENMRM 420 ENERMKLENE RMALELKRKE FGVDFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G179000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604503.1 | 0.0 | uncharacterized protein LOC110609317 | ||||
Refseq | XP_021604504.1 | 0.0 | uncharacterized protein LOC110609317 | ||||
TrEMBL | A0A251LK10 | 0.0 | A0A251LK10_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022469m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-135 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G179000.1.p |