PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G173300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 582aa    MW: 64647.9 Da    PI: 4.6656
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G173300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.53.4e-1392135813374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cA+a+++g++  a+al++ l++++s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++ev+P++k
  Manes.02G173300.2.p 213 RLLLNCANAIAEGKFGVADALINDLRQMVSIQGDPPQRIAAYMVEGLAARMASSGKYLYKALKCKEPP---SSDRLAAMQILFEVCPCFK 299
                          79*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f+++ aN aI ea+ege+rvHiiDfdi+qG Q+++L+q+La++p+ pp lR+Tgv+ pes+      l+ +g+rL+k+Ae+++vpfef++
  Manes.02G173300.2.p 300 FGFMSANGAIIEAFEGEKRVHIIDFDINQGNQYITLIQTLANQPGRPPYLRLTGVDYPESVqrPIGGLKIIGQRLEKLAEAFKVPFEFHA 389
                          ***********************************************************99878899*********************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           va++++ +++++L++kpgEal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fds
  Manes.02G173300.2.p 390 -VASKISLVSPSMLNCKPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTAPFFPRFVEAYNYYSAVFDS 478
                          .7**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+a+l res++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s +++++++ l++++ ++ y+++ee g+l++
  Manes.02G173300.2.p 479 LDATLQRESQDRMNVEKQCLARDIVNIVACEGDERIERYEVAGKWRARMMMAGFTSCSISPNVVETIRKLIKQYCDR-YTLKEEMGALLF 567
                          ***************************************************************************66.************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gW+d++L+++SaWr
  Manes.02G173300.2.p 568 GWEDKSLIVCSAWR 581
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.77185562IPR005202Transcription factor GRAS
PfamPF035141.2E-136213581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSLVRPAELS ATPYQNHKPY SLNGSNENSG LSNQIFGSDE QKTMYMHDSY SSETCEKCYN  60
DSPTEELIQP SSSSISGNSF HLQDVPSFQP RSGSGSSVTS QDLSNTSASV RYCGAYQFPS  120
ESDFLEIQSP DTVDFEADEM RSKLQELERA LLDDNGDDDM FGNSQGMEIG ELSEPIQNVT  180
LYDSPKESSS SDSNLSSISS NKVSQLSPLA PKRLLLNCAN AIAEGKFGVA DALINDLRQM  240
VSIQGDPPQR IAAYMVEGLA ARMASSGKYL YKALKCKEPP SSDRLAAMQI LFEVCPCFKF  300
GFMSANGAII EAFEGEKRVH IIDFDINQGN QYITLIQTLA NQPGRPPYLR LTGVDYPESV  360
QRPIGGLKII GQRLEKLAEA FKVPFEFHAV ASKISLVSPS MLNCKPGEAL VVNFAFQLHH  420
MPDESVSTVN ERDQLLRMVK SLNPKLVTVV EQDVNTNTAP FFPRFVEAYN YYSAVFDSLD  480
ATLQRESQDR MNVEKQCLAR DIVNIVACEG DERIERYEVA GKWRARMMMA GFTSCSISPN  540
VVETIRKLIK QYCDRYTLKE EMGALLFGWE DKSLIVCSAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6821758025378Protein SCARECROW
5b3h_A2e-6821758024377Protein SCARECROW
5b3h_D2e-6821758024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G173300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604568.10.0scarecrow-like protein 1
RefseqXP_021604569.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A251LJG10.0A0A251LJG1_MANES; Uncharacterized protein
STRINGcassava4.1_004349m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]